MolNFT v1 · #110032 · protein

Crystal structure of genomes uncoupled 4 (GUN4) in complex with deuteroporphyrin IX

4XKB · YCF53-like protein: “Crystal structure of genomes uncoupled 4 (GUN4) in complex with deuteroporphyrin IX”. X-ray diffraction, 1 ligand (DE9), 1 pocket (best druggability 0.66). MolNFT v1 #110032 on GenesisL1: 3D structure, binding…

PDB: 4XKB
Type: protein
Length: 225 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: YCF53-like protein
UniProt: P72583
Ligands: DE9
Pockets: 1 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 58% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	YCF53-like protein	protein	225	58% helix, 2% strand	P72583

Ligands and binding sites

DE9 · 3,3'-(3,7,12,17-tetramethylporphyrin-2,18-diyl)dipropanoic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	192	0.66	0.85	27	DE9

Compared structures

4XKB · Crystal Structure of GENOMES UNCOUPLED 4 (GUN4) in Complex with Deuteroporphyrin IX · the same entry in another collection · chain A against A, TM-score 1.00
P72583 · AlphaFold monomer V2.0 prediction for YCF53-like protein (P72583) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P72583
Elsewhere: RCSB PDB 4XKB · PDBe 4XKB · UniProt P72583

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