MolNFT v1 · #110003 · protein
Crystal structure of ANT(2") in complex with AMP and tobramycin
4XJE · Aadb: “Crystal structure of ANT(2") in complex with AMP and tobramycin”. X-ray diffraction, 2 ligands (AMP, TOY), 1 pocket (best druggability 0.67). MolNFT v1 #110003 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4XJE
- Type
- protein
- Length
- 175 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aadb
- UniProt
- Q6X3H6
- Ligands
- AMP, TOY
- Pockets
- 1 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aadb | protein | 175 | 48% helix, 23% strand | Q6X3H6 |
Ligands and binding sites
- AMP · Adenosine monophosphate · ligand · chains A
- TOY · Tobramycin · ligand · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 345 | 0.67 | 0.81 | 34 | AMP, TOY, GOL |
Compared structures
- 4XJE · Crystal structure of ANT(2) in complex with AMP and tobramycin" · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6X3H6
- Elsewhere: RCSB PDB 4XJE · PDBe 4XJE · UniProt Q6X3H6
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