MolNFT v1 · #109972 · protein

Crystal structure of a shikimate 5-dehydrogenase from mycobacterium fortuitum determined by iodide sad phasing

4XIJ: “Crystal structure of a shikimate 5-dehydrogenase from mycobacterium fortuitum determined by iodide sad phasing”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.69). MolNFT v1 #109972 on GenesisL1: 3D structure…

PDB: 4XIJ
Type: protein
Length: 268 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Shikimate 5-dehydrogenase
EC: 1.1.1.25
UniProt: K0V1M6
Ligands: SO4
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Shikimate 5-dehydrogenase (EC 1.1.1.25)	protein	268	40% helix, 21% strand	K0V1M6

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A
EDO · 1,2-ethanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	347	0.69	0.82	41	SO4

Compared structures

4XIJ · Crystal Structure of a Shikimate 5-dehydrogenase from Mycobacterium fortuitum Determined… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt K0V1M6
Elsewhere: RCSB PDB 4XIJ · PDBe 4XIJ · UniProt K0V1M6

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.