MolNFT v1 · #109874 · protein

Crystal structure of a domain of unknown function (DUF1537) from pectobacterium atrosepticum (ECA3761), target efi-511609, with bound D-threonate, domain swapped dimer

4XFM · Uncharacterized protein: “Crystal structure of a domain of unknown function (DUF1537) from pectobacterium atrosepticum (ECA3761)…”. X-ray diffraction, 1 ligand (THE), 1 pocket (best druggability 0.26). MolNFT v1 #109874 on…

PDB: 4XFM
Type: protein
Length: 400 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q6D0N7
Ligands: THE
Pockets: 1 · best druggability 0.26

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	400	44% helix, 23% strand	Q6D0N7

Ligands and binding sites

THE · Threonate ion · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	72	0.26	0.71	15	empty

Compared structures

4XFM · Crystal structure of a domain of unknown function (DUF1537) from Pectobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Q6D0N7 · AlphaFold monomer V2.0 prediction for D-threonate kinase (Q6D0N7) · a predicted model of the same protein · chain A against A, TM-score 0.81

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6D0N7
Elsewhere: RCSB PDB 4XFM · PDBe 4XFM · UniProt Q6D0N7

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