MolNFT v1 · #10956 · protein

Structure of yibk from haemophilus influenzae (HI0766), a truncated sequence homolog of tRNA (guanosine-2'-O-) methyltransferase (spou)

1J85: “Structure of yibk from haemophilus influenzae (HI0766), a truncated sequence homolog of tRNA…”. X-ray diffraction, 1 pocket (best druggability 0.55). MolNFT v1 #10956 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1J85
Type: protein
Length: 156 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Yibk
EC: 2.1.1.-
UniProt: P44868
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Yibk (EC 2.1.1.-)	protein	156	33% helix, 17% strand	P44868

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	153	0.55	0.81	21	empty

Compared structures

1J85 · Structure of YibK from Haemophilus influenzae (HI0766), a truncated sequence homolog of… · the same entry in another collection · chain A against A, TM-score 1.00
P44868 · AlphaFold monomer V2.0 prediction for tRNA (CYTIDINE(34)-2'-O)-methyltransferase (P44868) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P44868
Elsewhere: RCSB PDB 1J85 · PDBe 1J85 · UniProt P44868

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