MolNFT v1 · #109500 · protein
Structure of laccase from botrytis aclada with full copper content
4X4K: “Structure of laccase from botrytis aclada with full copper content”. X-ray diffraction, 5 ligands (NAG, MAN, BMA), 2 pockets (best druggability 0.51). MolNFT v1 #109500 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4X4K
- Type
- protein
- Length
- 525 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Laccase
- UniProt
- H8ZRU2
- Ligands
- NAG, MAN, BMA, CU, SO4
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Laccase | protein | 525 | 12% helix, 38% strand | H8ZRU2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 9 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 4 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 2 copies · chains A
- CU · Copper (II) ion · metal · 5 copies · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 134 | 0.51 | 0.79 | 29 | NAG |
| 2 | 63 | 0.46 | 0.83 | 18 | empty |
Modifications
Observed in the structure: 8 glycan, 3 disulfide (N-glycosylation, disulfide, O-glycosylation).
Compared structures
- 4X4K · Structure of laccase from Botrytis aclada with full copper content · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H8ZRU2
- Elsewhere: RCSB PDB 4X4K · PDBe 4X4K · UniProt H8ZRU2
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