MolNFT v1 · #10922 · protein + DNA
Crystal structure of the DNA-binding domain zalpha of dlm-1 bound to Z-DNA
1J75 · 5'-D(*TP*CP*GP*CP*GP*CP*G)-3': “Crystal structure of the DNA-binding domain zalpha of dlm-1 bound to Z-DNA”. X-ray diffraction. MolNFT v1 #10922 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1J75
- Type
- protein + DNA
- Length
- 64 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*TP*CP*GP*CP*GP*CP*G)-3'; Tumor stroma and activated macrophage protein dlm-1
- UniProt
- Q9QY24
Structure
x-ray diffraction · 2 distinct chains · 58% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | 5'-D(*TP*CP*GP*CP*GP*CP*G)-3' | dna | 7 | — | — |
| A | Tumor stroma and activated macrophage protein dlm-1 | protein | 57 | 58% helix, 19% strand | Q9QY24 |
Interfaces
1 interface between chains.
- B–A · 304 Ų buried · 3 hydrogen bonds · protein-nucleic
Compared structures
- 1J75 · Crystal Structure of the DNA-Binding Domain Zalpha of DLM-1 Bound to Z-DNA · the same entry in another collection · chain B against B, TM-score 1.00
- Q9QY24 · AlphaFold monomer V2.0 prediction for Z-DNA-binding protein 1 (Q9QY24) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9QY24
- Elsewhere: RCSB PDB 1J75 · PDBe 1J75 · UniProt Q9QY24
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