GL1X · GenesisL1 explorer

MolNFT v1 · #109205 · protein

Crystal structure of xiap-BIR2 domain complexed with (S)-3-(4- methoxyphenyl)-2-((S)-2-((S)-1-((S)-2-((S)-2-(methylamino) PROPANAMIDO)PENT-4-YNOYL)PYRROLIDINE-2-carboxamido)-3- PHENYLPROPANAMIDO)PROPANOIC acid

4WVS · E3 ubiquitin-protein ligase xiap: “Crystal structure of xiap-BIR2 domain complexed with (S)-3-(4…”. X-ray diffraction, 2 ligands (ZN, SO4). MolNFT v1 #109205 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
4WVS
Type
protein
Length
84 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
E3 ubiquitin-protein ligase xiap; 3,11-difluoro-6,8,13-trimethyl-8H-QUINO[4,3,2-KL]ACRIDIN…
EC
6.3.2.-
UniProt
P98170
Ligands
ZN, SO4

Structure

x-ray diffraction · 2 distinct chains · 31% helix, 14% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AE3 ubiquitin-protein ligase xiap (EC 6.3.2.-)protein7933% helix, 11% strandP98170
B3,11-difluoro-6,8,13-trimethyl-8H-QUINO[4,3,2-KL]ACRIDIN- 13-iumprotein50% helix, 60% strand—

Ligands and binding sites

  • ZN · Zinc ion · metal · chains A
  • SO4 · Sulfate ion · ion · 3 copies · chains A
  • GOL · Glycerol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 447 Ų buried · 13 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 modified (nonstandard).

Compared structures

  • 4WVS · Crystal structure of XIAP-BIR2 domain complexed with… · the same entry in another collection · chain A against A, TM-score 1.00

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