MolNFT v1 · #109105 · protein
Crystal structure of PALS1/CRB complex
4WSI · Maguk P55 subfamily member 5: “Crystal structure of PALS1/CRB complex”. X-ray diffraction, 10 pockets (best druggability 0.85). MolNFT v1 #109105 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4WSI
- Type
- protein
- Length
- 767 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maguk P55 subfamily member 5; Protein crumbs
- UniProt
- Q8N3R9, P10040
- Pockets
- 10 · best druggability 0.85
Structure
x-ray diffraction · 3 distinct chains · 26% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maguk P55 subfamily member 5 | protein | 372 | 25% helix, 31% strand | Q8N3R9 |
| B | Maguk P55 subfamily member 5 | protein | 359 | 26% helix, 31% strand | Q8N3R9 |
| X, Y | Protein crumbs | protein | 18 | 28% helix, 11% strand | P10040 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1028 | 0.85 | 0.86 | 90 | empty |
| 2 | 576 | 0.81 | 0.86 | 57 | empty |
| 3 | 909 | 0.78 | 0.81 | 78 | empty |
| 4 | 120 | 0.66 | 0.89 | 25 | empty |
| 5 | 109 | 0.65 | 0.89 | 21 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1547 Ų buried · 29 hydrogen bonds · protein-protein
- A–X · 1409 Ų buried · 22 hydrogen bonds · protein-protein
- B–Y · 1355 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 4WSI · Crystal Structure of PALS1/Crb complex · the same entry in another collection · chain Y against Y, TM-score 1.00
- Q8N3R9 · AlphaFold monomer V2.0 prediction for maguk P55 subfamily member 5 (Q8N3R9) · a predicted model of the same protein · chain B against A, TM-score 0.58
- P10040 · AlphaFold monomer V2.0 prediction for protein crumbs (P10040) · a predicted model of the same protein · chain X against A, TM-score 0.31
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N3R9
- Every structure of UniProt P10040
- Elsewhere: RCSB PDB 4WSI · PDBe 4WSI · UniProt Q8N3R9 · UniProt P10040
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