MolNFT v1 · #109071 · protein
AKR1C3 complexed with breakdown product of N-(tert-butyl)-2-(2-chloro- 4-(((3-mercapto-5-methyl-4H-1,2,4-triazol-4-YL)AMINO)METHYL)-6- METHOXYPHENOXY)ACETAMIDE
4WRH · Aldo-keto reductase family 1 member C3: “AKR1C3 complexed with breakdown product of N-(tert-butyl)-2-(2-chloro…”. X-ray diffraction, 3 ligands (NAP, YY2, YY1), 2 pockets (best druggability 0.81). MolNFT v1 #109071 on GenesisL1: 3D…
- PDB
- 4WRH
- Type
- protein
- Length
- 316 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aldo-keto reductase family 1 member C3
- EC
- 1.-.-.-, 1.1.1.357, 1.1.1.112, 1.1.1.188, 1.1.1.239, 1.1.1.64, 1.3.1.20
- UniProt
- P42330
- Ligands
- NAP, YY2, YY1
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aldo-keto reductase family 1 member C3 (EC 1.-.-.-, 1.1.1.357, 1.1.1.112, 1.1.1.188, 1.1.1.239, 1.1.1.64, 1.3.1.20) | protein | 316 | 42% helix, 17% strand | P42330 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
- YY2 · 2-[4-(aminomethyl)-2-chloro-6-methoxyphenoxy]-N-tert-butylacetamide · ligand · chains A
- YY1 · 5-methyl-4H-1,2,4-triazole-3-thiol · ligand · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 607 | 0.81 | 0.86 | 68 | NAP, YY2, YY1 |
| 2 | 71 | 0.31 | 0.74 | 15 | EDO |
Compared structures
- 4WRH · AKR1C3 complexed with breakdown product of N-(tert-butyl)-2-(2-chloro-4-(((3-mercapto-5-me… · the same entry in another collection · chain A against A, TM-score 1.00
- P42330 · AlphaFold monomer V2.0 prediction for aldo-keto reductase family 1 member C3 (P42330) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42330
- Elsewhere: RCSB PDB 4WRH · PDBe 4WRH · UniProt P42330
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