MolNFT v1 · #10905 · protein
Crystal structure of tatd-related deoxyribonuclease (TM0667) from thermotoga maritima at 1.8 a resolution
1J6O: “Crystal structure of tatd-related deoxyribonuclease (TM0667) from thermotoga maritima at 1.8 a resolution”. X-ray diffraction, 2 pockets (best druggability 0.44). MolNFT v1 #10905 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1J6O
- Type
- protein
- Length
- 260 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tatd-related deoxyribonuclease
- EC
- 3.1.21.-
- UniProt
- Q9WZD5
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tatd-related deoxyribonuclease (EC 3.1.21.-) | protein | 260 | 48% helix, 18% strand | Q9WZD5 |
Ligands and binding sites
- IPA · Isopropyl alcohol · additive
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.44 | 0.75 | 32 | empty |
| 2 | 69 | 0.29 | 0.73 | 16 | empty |
Modifications
Observed in the structure: 1 modified (engineered).
Compared structures
- 1J6O · Crystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WZD5
- Elsewhere: RCSB PDB 1J6O · PDBe 1J6O · UniProt Q9WZD5
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