Stationary phase survival protein yuic from B.SUBTILIS complexed with nag

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 29% strand (DSSP).

Ligands and binding sites

• 3P9 · (2S)-2-{[(2S)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol · ligand · chains B
• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A, B
• DMS · Dimethyl sulfoxide · additive · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Interfaces

1 interface between chains.

• A–B · 4139 Ų buried · 62 hydrogen bonds · protein-protein

Compared structures

• 4WJT · Stationary Phase Survival Protein YuiC from B.subtilis complexed with NAG · the same entry in another collection · chain A against A, TM-score 1.00
• O32108 · AlphaFold monomer V2.0 prediction for uncharacterized protein yuic (O32108) · a predicted model of the same protein · chain A against A, TM-score 0.72

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt O32108
• Elsewhere: RCSB PDB 4WJT · PDBe 4WJT · UniProt O32108