MolNFT v1 · #108715 · RNA
Structure of the complete bacterial srp alu domain
4WFL · RNA: “Structure of the complete bacterial srp alu domain”. X-ray diffraction, 2 ligands (NCO, MG), 3 pockets (best druggability 0.61). MolNFT v1 #108715 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4WFL
- Type
- RNA
- Length
- 107 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA
- Ligands
- NCO, MG
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA | rna | 107 | — | — |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · 15 copies · chains A
- MG · Magnesium ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 593 | 0.61 | 0.74 | 31 | NCO |
| 2 | 562 | 0.59 | 0.74 | 31 | NCO |
| 3 | 213 | 0.45 | 0.74 | 17 | NCO |
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 4WFL · Structure of the complete bacterial SRP Alu domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4WFL · PDBe 4WFL
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