MolNFT v1 · #108704 · protein + RNA
The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with linezolid
4WFA: “The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with linezolid”. X-ray diffraction. MolNFT v1 #108704 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4WFA
- Type
- protein + RNA
- Length
- 5,801 residues
- Chains
- 28
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P60430, Q2FW06, Q2FW07, Q2FW18, Q2FW21, Q2FW38, Q2FW16, P0A0F8, Q2FW13, Q2FW33, Q2FW22, Q2FZ42, Q2FXQ1, Q2FXS8, Q2FW11, Q2FW08, Q2FW17, Q2FJE0, Q2FXT0, Q2FZ60, Q2FW14, P0A0G2, Q2FZF1, Q2FUQ0, Q2FXQ0, Q2FW29
Structure
x-ray diffraction · 28 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | — | rna | 2711 | — | — |
| Y | — | rna | 114 | — | — |
| A | — | protein | 268 | — | P60430 |
| B | — | protein | 215 | — | Q2FW06 |
| C | — | protein | 199 | — | Q2FW07 |
| D | — | protein | 155 | — | Q2FW18 |
| E | — | protein | 157 | — | Q2FW21 |
| G | — | protein | 145 | — | Q2FW38 |
| H | — | protein | 122 | — | Q2FW16 |
| I | — | protein | 131 | — | P0A0F8 |
| J | — | protein | 138 | — | Q2FW13 |
| K | — | protein | 119 | — | Q2FW33 |
| L | — | protein | 108 | — | Q2FW22 |
| M | — | protein | 109 | — | Q2FZ42 |
| N | — | protein | 116 | — | Q2FXQ1 |
| O | — | protein | 101 | — | Q2FXS8 |
| P | — | protein | 112 | — | Q2FW11 |
| Q | — | protein | 88 | — | Q2FW08 |
| R | — | protein | 100 | — | Q2FW17 |
| S | — | protein | 167 | — | Q2FJE0 |
| T | — | protein | 75 | — | Q2FXT0 |
| U | — | protein | 44 | — | Q2FZ60 |
| V | — | protein | 65 | — | Q2FW14 |
| W | — | protein | 57 | — | P0A0G2 |
| Z | — | protein | 44 | — | Q2FZF1 |
| 2 | — | protein | 44 | — | Q2FUQ0 |
| 3 | — | protein | 60 | — | Q2FXQ0 |
| 4 | — | protein | 37 | — | Q2FW29 |
Compared structures
- Q2FXQ1 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L20 (Q2FXQ1) · a predicted model of the same protein · chain N against A, TM-score 0.98
- Q2FW16 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L14 (Q2FW16) · a predicted model of the same protein · chain H against A, TM-score 0.98
- Q2FW07 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L4 (Q2FW07) · a predicted model of the same protein · chain C against A, TM-score 0.98
- P60430 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2 (P60430) · a predicted model of the same protein · chain A against A, TM-score 0.97
- Q2FW38 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L13 (Q2FW38) · a predicted model of the same protein · chain G against A, TM-score 0.97
- Q2FW11 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L22 (Q2FW11) · a predicted model of the same protein · chain P against A, TM-score 0.96
- Q2FW33 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L17 (Q2FW33) · a predicted model of the same protein · chain K against A, TM-score 0.96
- Q2FXS8 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L21 (Q2FXS8) · a predicted model of the same protein · chain O against A, TM-score 0.96
- Q2FW06 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L3 (Q2FW06) · a predicted model of the same protein · chain B against A, TM-score 0.95
- P0A0G2 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L30 (P0A0G2) · a predicted model of the same protein · chain W against A, TM-score 0.95
- Q2FJE0 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L25 (Q2FJE0) · a predicted model of the same protein · chain S against A, TM-score 0.94
- Q2FW18 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L5 (Q2FW18) · a predicted model of the same protein · chain D against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P60430
- Every structure of UniProt Q2FW06
- Every structure of UniProt Q2FW07
- Every structure of UniProt Q2FW18
- Every structure of UniProt Q2FW21
- Every structure of UniProt Q2FW38
- Every structure of UniProt Q2FW16
- Every structure of UniProt P0A0F8
- Every structure of UniProt Q2FW13
- Every structure of UniProt Q2FW33
- Every structure of UniProt Q2FW22
- Every structure of UniProt Q2FZ42
- Every structure of UniProt Q2FXQ1
- Every structure of UniProt Q2FXS8
- Every structure of UniProt Q2FW11
- Every structure of UniProt Q2FW08
- Every structure of UniProt Q2FW17
- Every structure of UniProt Q2FJE0
- Every structure of UniProt Q2FXT0
- Every structure of UniProt Q2FZ60
- Every structure of UniProt Q2FW14
- Every structure of UniProt P0A0G2
- Every structure of UniProt Q2FZF1
- Every structure of UniProt Q2FUQ0
- Every structure of UniProt Q2FXQ0
- Every structure of UniProt Q2FW29
- Elsewhere: RCSB PDB 4WFA · PDBe 4WFA · UniProt P60430 · UniProt Q2FW06 · UniProt Q2FW07 · UniProt Q2FW18 · UniProt Q2FW21 · UniProt Q2FW38 · UniProt Q2FW16 · UniProt P0A0F8 · UniProt Q2FW13 · UniProt Q2FW33 · UniProt Q2FW22 · UniProt Q2FZ42 · UniProt Q2FXQ1 · UniProt Q2FXS8 · UniProt Q2FW11 · UniProt Q2FW08 · UniProt Q2FW17 · UniProt Q2FJE0 · UniProt Q2FXT0 · UniProt Q2FZ60 · UniProt Q2FW14 · UniProt P0A0G2 · UniProt Q2FZF1 · UniProt Q2FUQ0 · UniProt Q2FXQ0 · UniProt Q2FW29
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