MolNFT v1 · #108696 · protein
Crystal structure of ilid - an improved light-inducible dimer
4WF0 · NPH1-1: “Crystal structure of ilid - an improved light-inducible dimer”. X-ray diffraction, 2 ligands (FMN, CL), 1 pocket (best druggability 0.81). MolNFT v1 #108696 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4WF0
- Type
- protein
- Length
- 288 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NPH1-1
- UniProt
- O49003
- Ligands
- FMN, CL
- Pockets
- 1 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | NPH1-1 | protein | 144 | 38% helix, 28% strand | O49003 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1087 | 0.81 | 0.82 | 79 | FMN |
Interfaces
1 interface between chains.
- A–B · 324 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 4WF0 · Crystal Structure of iLID - an Improved Light-Inducible Dimer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O49003
- Elsewhere: RCSB PDB 4WF0 · PDBe 4WF0 · UniProt O49003
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