MolNFT v1 · #108655 · protein
Crystal structure of haloalkane dehalogenase LINB32 mutant (L177W) from sphingobium japonicum UT26
4WDQ: “Crystal structure of haloalkane dehalogenase LINB32 mutant (L177W) from sphingobium japonicum UT26”. X-ray diffraction, 2 ligands (MG, CL), 1 pocket (best druggability 0.32). MolNFT v1 #108655 on GenesisL1: 3D structure, binding…
- PDB
- 4WDQ
- Type
- protein
- Length
- 297 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Haloalkane dehalogenase
- EC
- 3.8.1.5
- UniProt
- P51698
- Ligands
- MG, CL
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Haloalkane dehalogenase (EC 3.8.1.5) | protein | 297 | 43% helix, 19% strand | P51698 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.32 | 0.76 | 15 | empty |
Compared structures
- 4WDQ · Crystal structure of haloalkane dehalogenase LinB32 mutant (L177W) from Sphingobium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51698
- Elsewhere: RCSB PDB 4WDQ · PDBe 4WDQ · UniProt P51698
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