MolNFT v1 · #108623 · protein
Structure of icab from ammonifex degensii
4WCJ · Polysaccharide deacetylase: “Structure of icab from ammonifex degensii”. X-ray diffraction, 2 ligands (ZN, CL), 2 pockets (best druggability 0.38). MolNFT v1 #108623 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4WCJ
- Type
- protein
- Length
- 233 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polysaccharide deacetylase
- UniProt
- C9RCK9
- Ligands
- ZN, CL
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polysaccharide deacetylase | protein | 233 | 38% helix, 24% strand | C9RCK9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 89 | 0.38 | 0.76 | 17 | ZN |
| 2 | 59 | 0.37 | 0.79 | 14 | empty |
Compared structures
- 4WCJ · Structure of IcaB from Ammonifex degensii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C9RCK9
- Elsewhere: RCSB PDB 4WCJ · PDBe 4WCJ · UniProt C9RCK9
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