MolNFT v1 · #108612 · protein
Heterogeneous dodecamer formed from macrocycles containing a sequence from beta-2-MICROGLOBULIN(63-69).
4WC8 · Orn-tyr-leu-leu-phi-tyr-thr-glu-orn-lys-val-ala-maa-ala…: “Heterogeneous dodecamer formed from macrocycles containing a sequence from beta-2-MICROGLOBULIN(63-69).”. X-ray diffraction, 2 ligands (SO4, CL). MolNFT v1 #108612 on…
- PDB
- 4WC8
- Type
- protein
- Length
- 192 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orn-tyr-leu-leu-phi-tyr-thr-glu-orn-lys-val-ala-maa-ala- val-lys
- Ligands
- SO4, CL
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 69% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L | Orn-tyr-leu-leu-phi-tyr-thr-glu-orn-lys-val-ala-maa-ala- val-lys | protein | 16 | 0% helix, 69% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 13 copies · chains A, E, F, C, G, J, D, H, I, B, K
- CL · Chloride ion · ion · 9 copies · chains B, E, D, F, G, H, L, I, K
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
33 interfaces between chains.
- G–H · 281 Ų buried · 5 hydrogen bonds · protein-protein
- F–H · 279 Ų buried · 5 hydrogen bonds · protein-protein
- H–L · 279 Ų buried · 4 hydrogen bonds · protein-protein
- F–G · 276 Ų buried · 5 hydrogen bonds · protein-protein
- G–J · 270 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 48 modified (nonstandard).
Compared structures
- 4WC8 · Heterogeneous dodecamer formed from macrocycles containing a sequence from… · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4WC8 · PDBe 4WC8
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