GL1X · GenesisL1 explorer

MolNFT v1 · #108534 · protein

The FK1 domain of FKBP51 in complex with (1S,5S,6R)-10-[(3,5- DICHLOROPHENYL)SULFONYL]-5-[(1R)-1,2-dihydroxyethyl]-3-[2-(3,4- DIMETHOXYPHENOXY)ETHYL]-3,10-DIAZABICYCLO[4.3.1]DECAN-2-one

4W9O · Peptidyl-prolyl cis-trans isomerase FKBP5: “The FK1 domain of FKBP51 in complex with (1S,5S,6R)-10-[(3,5…”. X-ray diffraction, 1 ligand (3JQ), 1 pocket (best druggability 0.73). MolNFT v1 #108534 on GenesisL1: 3D structure, binding…

PDB
4W9O
Type
protein
Length
250 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Peptidyl-prolyl cis-trans isomerase FKBP5
EC
5.2.1.8
UniProt
Q13451
Ligands
3JQ
Pockets
1 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 14% helix, 38% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
APeptidyl-prolyl cis-trans isomerase FKBP5 (EC 5.2.1.8)protein12311% helix, 39% strandQ13451
EPeptidyl-prolyl cis-trans isomerase FKBP5 (EC 5.2.1.8)protein12717% helix, 36% strandQ13451

Ligands and binding sites

  • 3JQ · (1S,5S,6R)-10-[(3,5-dichlorophenyl)sulfonyl]-5-[(1R)-1,2-dihydroxyethyl]-3-[2-(3,4-dimethoxyphenoxy)ethyl]-3,10-diazabicyclo[4.3.1]decan-2-one · ligand · 2 copies · chains A, E
  • ACT · Acetate ion · additive · 2 copies · chains E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
17490.730.78593JQ

Interfaces

1 interface between chains.

  • A–E · 212 Ų buried · 4 hydrogen bonds · protein-protein

Compared structures

  • 4W9O · The Fk1 domain of FKBP51 in complex with (1S,5S,6R)-10-[(3,5-dichlorophenyl)sulfonyl]-5-[(… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q13451 · AlphaFold monomer V2.0 prediction for peptidyl-prolyl cis-trans isomerase FKBP5 (Q13451) · a predicted model of the same protein · chain E against A, TM-score 0.98

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.