MolNFT v1 · #108507 · protein
Crystal structure of oligomeric CMR4 from pyrococcus furiosus
4W8W · CRISPR system cmr subunit CMR4: “Crystal structure of oligomeric CMR4 from pyrococcus furiosus”. X-ray diffraction, 12 pockets (best druggability 0.77). MolNFT v1 #108507 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4W8W
- Type
- protein
- Length
- 1,017 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CRISPR system cmr subunit CMR4
- UniProt
- Q8U1S9
- Pockets
- 12 · best druggability 0.77
Structure
x-ray diffraction · 4 distinct chains · 32% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CRISPR system cmr subunit CMR4 | protein | 251 | 34% helix, 28% strand | Q8U1S9 |
| B | CRISPR system cmr subunit CMR4 | protein | 254 | 33% helix, 29% strand | Q8U1S9 |
| C | CRISPR system cmr subunit CMR4 | protein | 255 | 31% helix, 29% strand | Q8U1S9 |
| D | CRISPR system cmr subunit CMR4 | protein | 257 | 32% helix, 30% strand | Q8U1S9 |
Pockets
12 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 107 | 0.77 | 0.97 | 32 | empty |
| 2 | 82 | 0.76 | 0.98 | 29 | empty |
| 3 | 349 | 0.65 | 0.80 | 31 | empty |
| 4 | 317 | 0.64 | 0.80 | 30 | empty |
| 5 | 329 | 0.60 | 0.78 | 32 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1474 Ų buried · 22 hydrogen bonds · protein-protein
- C–D · 1442 Ų buried · 23 hydrogen bonds · protein-protein
- B–C · 1439 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 4W8W · Crystal structure of oligomeric Cmr4 from Pyrococcus furiosus · the same entry in another collection · chain D against D, TM-score 1.00
- Q8U1S9 · AlphaFold monomer V2.0 prediction for CRISPR system cmr endoribonuclease CMR4 (Q8U1S9) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8U1S9
- Elsewhere: RCSB PDB 4W8W · PDBe 4W8W · UniProt Q8U1S9
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