MolNFT v1 · #108442 · protein

Co-complex structure of the lectin domain of F18 fimbrial adhesin fedf with inhibitory nanobody NBFEDF9

4W6Y · F18 fimbrial adhesin ac: “Co-complex structure of the lectin domain of F18 fimbrial adhesin fedf with inhibitory nanobody NBFEDF9”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.60). MolNFT v1 #108442 on…

PDB: 4W6Y
Type: protein
Length: 274 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: F18 fimbrial adhesin ac; Nanobody NBFEDF9
UniProt: Q47212
Ligands: SO4
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 56% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	F18 fimbrial adhesin ac	protein	146	8% helix, 64% strand	Q47212
B	Nanobody NBFEDF9	protein	128	5% helix, 48% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	338	0.60	0.78	34	SO4

Interfaces

1 interface between chains.

A–B · 732 Å² buried · 14 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

4W6Y · Co-complex structure of the lectin domain of F18 fimbrial adhesin FedF with inhibitory… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q47212
Elsewhere: RCSB PDB 4W6Y · PDBe 4W6Y · UniProt Q47212

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