MolNFT v1 · #10842 · protein
Crystal structure of aspartase from bacillus sp. YM55-1
1J3U: “Crystal structure of aspartase from bacillus sp. YM55-1”. X-ray diffraction, 12 pockets (best druggability 0.65). MolNFT v1 #10842 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1J3U
- Type
- protein
- Length
- 924 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aspartase
- EC
- 4.3.1.1
- UniProt
- Q9LCC6
- Pockets
- 12 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 60% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Aspartase (EC 4.3.1.1) | protein | 462 | 60% helix, 7% strand | Q9LCC6 |
Pockets
12 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 182 | 0.65 | 0.85 | 23 | empty |
| 2 | 92 | 0.61 | 0.89 | 25 | empty |
| 3 | 83 | 0.53 | 0.85 | 17 | empty |
| 4 | 70 | 0.50 | 0.84 | 15 | empty |
| 5 | 74 | 0.48 | 0.83 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 3370 Ų buried · 61 hydrogen bonds · protein-protein
Compared structures
- 1J3U · Crystal structure of aspartase from Bacillus sp. YM55-1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LCC6
- Elsewhere: RCSB PDB 1J3U · PDBe 1J3U · UniProt Q9LCC6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.