MolNFT v1 · #108416 · protein
Cytoplasmically produced homodimeric single domain antibody (sdab) C22A/C99V variant against staphylococcal enterotoxin B (seb)
4W68: “Cytoplasmically produced homodimeric single domain antibody (sdab) C22A/C99V variant against staphylococcal…”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #108416 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4W68
- Type
- protein
- Length
- 260 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Single domain antibody
- Ligands
- SO4
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | Single domain antibody | protein | 130 | 12% helix, 50% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- B–A · 938 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 4W68 · Cytoplasmically Produced Homodimeric Single Domain Antibody (sdAb) C22A/C99V variant… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4W68 · PDBe 4W68
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.