MolNFT v1 · #108412 · protein

HCP1 protein from acinetobacter baumannii AB0057

4W64 · Type VI secretion system effector, HCP1 family: “HCP1 protein from acinetobacter baumannii AB0057”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.43). MolNFT v1 #108412 on GenesisL1: 3D structure, binding sites…

PDB: 4W64
Type: protein
Length: 497 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Type VI secretion system effector, HCP1 family
UniProt: B7I1Z0
Ligands: SO4
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 3 distinct chains · 8% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Type VI secretion system effector, HCP1 family	protein	171	8% helix, 50% strand	B7I1Z0
B	Type VI secretion system effector, HCP1 family	protein	160	8% helix, 46% strand	B7I1Z0
C	Type VI secretion system effector, HCP1 family	protein	166	9% helix, 51% strand	B7I1Z0

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.43	0.81	21	empty

Interfaces

1 interface between chains.

B–C · 384 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

4W64 · Hcp1 protein from Acinetobacter baumannii AB0057 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B7I1Z0
Elsewhere: RCSB PDB 4W64 · PDBe 4W64 · UniProt B7I1Z0

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