MolNFT v1 · #108408 · protein
High resolution crystal structure of catalytic domain of chitinase 60 from psychrophilic bacteria moritella marina.
4W5Z: “High resolution crystal structure of catalytic domain of chitinase 60 from psychrophilic bacteria moritella…”. X-ray diffraction, 2 ligands (NA, CL), 1 pocket (best druggability 0.53). MolNFT v1 #108408 on GenesisL1: 3D structure…
- PDB
- 4W5Z
- Type
- protein
- Length
- 323 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chitinase 60
- EC
- 3.2.1.14
- UniProt
- B1VBB0
- Ligands
- NA, CL
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chitinase 60 (EC 3.2.1.14) | protein | 323 | 36% helix, 20% strand | B1VBB0 |
Ligands and binding sites
- NA · Sodium ion · metal · 8 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- ACT · Acetate ion · additive · 3 copies · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 236 | 0.53 | 0.76 | 33 | MPD, ACT, CL |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 4W5Z · High resolution crystal structure of catalytic domain of Chitinase 60 from psychrophilic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1VBB0
- Elsewhere: RCSB PDB 4W5Z · PDBe 4W5Z · UniProt B1VBB0
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