MolNFT v1 · #108311 · protein
The structure of a-pgs from pseudomonas aeruginosa (semet derivative)
4V34 · Alanyl-tRNA-dependent L-alanyl- phophatidylglycerol synthase: “The structure of a-pgs from pseudomonas aeruginosa (semet derivative)”. X-ray diffraction, 2 ligands (CL, SO4), 5 pockets (best druggability 0.68). MolNFT v1 #108311 on…
- PDB
- 4V34
- Type
- protein
- Length
- 323 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alanyl-tRNA-dependent L-alanyl- phophatidylglycerol synthase
- EC
- 2.3.2.11
- UniProt
- Q9I537
- Ligands
- CL, SO4
- Pockets
- 5 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alanyl-tRNA-dependent L-alanyl- phophatidylglycerol synthase (EC 2.3.2.11) | protein | 323 | 38% helix, 28% strand | Q9I537 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 166 | 0.68 | 0.88 | 38 | CL |
| 2 | 146 | 0.50 | 0.78 | 24 | empty |
| 3 | 97 | 0.47 | 0.80 | 18 | empty |
| 4 | 138 | 0.43 | 0.75 | 17 | empty |
| 5 | 65 | 0.32 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 4V34 · The Structure of A-PGS from Pseudomonas aeruginosa (SeMet derivative) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I537
- Elsewhere: RCSB PDB 4V34 · PDBe 4V34 · UniProt Q9I537
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