MolNFT v1 · #108250 · protein
Semet structure of a novel carbohydrate binding module from glycoside hydrolase family 5 glucanase from ruminococcus flavefaciens fd-1
4V18: “Semet structure of a novel carbohydrate binding module from glycoside hydrolase family 5 glucanase from…”. X-ray diffraction, 3 pockets (best druggability 0.71). MolNFT v1 #108250 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4V18
- Type
- protein
- Length
- 299 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carbohydrate binding module
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 14% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carbohydrate binding module | protein | 151 | 15% helix, 52% strand | — |
| B | Carbohydrate binding module | protein | 148 | 14% helix, 53% strand | — |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.71 | 0.97 | 20 | empty |
| 2 | 63 | 0.69 | 0.96 | 19 | empty |
| 3 | 75 | 0.45 | 0.82 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1739 Ų buried · 20 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 4V18 · SeMet structure of a novel carbohydrate binding module from glycoside hydrolase family 5… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4V18 · PDBe 4V18
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