MolNFT v1 · #108215 · protein
MINC:MIND cell division protein complex, aquifex aeolicus
4V02 · Site-determining protein: “MINC:MIND cell division protein complex, aquifex aeolicus”. X-ray diffraction, 2 ligands (ATP, MG), 12 pockets (best druggability 0.57). MolNFT v1 #108215 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4V02
- Type
- protein
- Length
- 727 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Site-determining protein; Probable septum site-determining protein minc
- UniProt
- O67033, O67034
- Ligands
- ATP, MG
- Pockets
- 12 · best druggability 0.57
Structure
x-ray diffraction · 4 distinct chains · 30% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Site-determining protein | protein | 244 | 40% helix, 18% strand | O67033 |
| B | Site-determining protein | protein | 242 | 41% helix, 18% strand | O67033 |
| C | Probable septum site-determining protein minc | protein | 122 | 7% helix, 46% strand | O67034 |
| D | Probable septum site-determining protein minc | protein | 119 | 8% helix, 47% strand | O67034 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 212 | 0.57 | 0.79 | 23 | empty |
| 2 | 173 | 0.56 | 0.81 | 31 | MG, ATP |
| 3 | 181 | 0.54 | 0.79 | 32 | MG, ATP |
| 4 | 139 | 0.51 | 0.79 | 21 | empty |
| 5 | 94 | 0.41 | 0.78 | 18 | empty |
Interfaces
5 interfaces between chains.
- C–D · 1055 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 528 Ų buried · 12 hydrogen bonds · protein-protein
- A–D · 519 Ų buried · 14 hydrogen bonds · protein-protein
- B–D · 406 Ų buried · 1 hydrogen bond · protein-protein
- A–C · 400 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 4V02 · MinC:MinD cell division protein complex, Aquifex aeolicus · the same entry in another collection · chain B against B, TM-score 1.00
- O67034 · AlphaFold monomer V2.0 prediction for probable septum site- determining protein minc… · a predicted model of the same protein · chain D against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O67033
- Every structure of UniProt O67034
- Elsewhere: RCSB PDB 4V02 · PDBe 4V02 · UniProt O67033 · UniProt O67034
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