MolNFT v1 · #108183 · protein
Crystal structure of the N-terminal lysm domains from the putative NLPC/P60 D,L endopeptidase from T. thermophilus
4UZ2 · Cell wall-binding endopeptidase-related protein: “Crystal structure of the N-terminal lysm domains from the putative NLPC/P60 D,L endopeptidase from T.…”. X-ray diffraction, 2 pockets (best druggability 0.57). MolNFT v1 #108183 on…
- PDB
- 4UZ2
- Type
- protein
- Length
- 393 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell wall-binding endopeptidase-related protein
- UniProt
- Q5SLM7
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 4 distinct chains · 29% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cell wall-binding endopeptidase-related protein | protein | 99 | 29% helix, 14% strand | Q5SLM7 |
| B | Cell wall-binding endopeptidase-related protein | protein | 100 | 29% helix, 14% strand | Q5SLM7 |
| C | Cell wall-binding endopeptidase-related protein | protein | 98 | 28% helix, 17% strand | Q5SLM7 |
| D | Cell wall-binding endopeptidase-related protein | protein | 96 | 30% helix, 15% strand | Q5SLM7 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 368 | 0.57 | 0.75 | 45 | empty |
| 2 | 106 | 0.57 | 0.85 | 28 | empty |
Interfaces
2 interfaces between chains.
- B–C · 722 Ų buried · 11 hydrogen bonds · protein-protein
- C–D · 267 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 4UZ2 · Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SLM7
- Elsewhere: RCSB PDB 4UZ2 · PDBe 4UZ2 · UniProt Q5SLM7
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