MolNFT v1 · #108160 · protein

Crystal structure of SEC14-like protein 3

4UYB: “Crystal structure of SEC14-like protein 3”. X-ray diffraction, 1 ligand (UNL), 6 pockets (best druggability 0.84). MolNFT v1 #108160 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4UYB
Type: protein
Length: 401 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SEC14-like protein 3
UniProt: Q9UDX4
Ligands: UNL
Pockets: 6 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SEC14-like protein 3	protein	401	38% helix, 24% strand	Q9UDX4

Ligands and binding sites

UNL · Unknown ligand · ligand · chains A
EDO · 1,2-ethanediol · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	148	0.84	0.98	20	UNL
2	165	0.69	0.88	33	empty
3	95	0.55	0.85	22	empty
4	148	0.53	0.80	32	EDO
5	103	0.42	0.78	22	empty

Compared structures

4UYB · Crystal structure of SEC14-like protein 3 · the same entry in another collection · chain A against A, TM-score 1.00
Q9UDX4 · AlphaFold monomer V2.0 prediction for SEC14-like protein 3 (Q9UDX4) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UDX4
Elsewhere: RCSB PDB 4UYB · PDBe 4UYB · UniProt Q9UDX4

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