MolNFT v1 · #107806 · protein

Structure of galactose oxidase homologue from streptomyces lividans

4UNM · Secreted protein: “Structure of galactose oxidase homologue from streptomyces lividans”. X-ray diffraction, 1 ligand (CU), 10 pockets (best druggability 0.76). MolNFT v1 #107806 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 4UNM
Type: protein
Length: 1,208 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Secreted protein
UniProt: D6EWM0
Ligands: CU
Pockets: 10 · best druggability 0.76

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Secreted protein	protein	599	7% helix, 38% strand	D6EWM0
B	Secreted protein	protein	609	7% helix, 39% strand	D6EWM0

Ligands and binding sites

CU · Copper (II) ion · metal · 2 copies · chains A, B
ACT · Acetate ion · additive · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

10 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	375	0.76	0.86	77	empty
2	478	0.75	0.83	74	empty
3	58	0.45	0.83	13	empty
4	125	0.37	0.73	23	empty
5	86	0.36	0.75	28	ACT

Interfaces

1 interface between chains.

A–B · 114 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

4UNM · Structure of Galactose Oxidase homologue from Streptomyces lividans · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D6EWM0
Elsewhere: RCSB PDB 4UNM · PDBe 4UNM · UniProt D6EWM0

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