MolNFT v1 · #107671 · protein
Structure of bovine endothelial nitric oxide synthase heme domain in complex with N1-(3-(2-(6-amino-4-methylpyridin-2- YL)ETHYL)PHENYL)-N1,N2-dimethylethane-1,2-diamine
4UH7 · Nitric oxide synthase, endothelial: “Structure of bovine endothelial nitric oxide synthase heme domain in complex with…”. X-ray diffraction, 4 ligands (4V4, HEM, H4B), 11 pockets (best druggability 0.84). MolNFT v1 #107671 on…
- PDB
- 4UH7
- Type
- protein
- Length
- 807 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nitric oxide synthase, endothelial
- EC
- 1.14.13.39
- UniProt
- P29473
- Ligands
- 4V4, HEM, H4B, ZN
- Pockets
- 11 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nitric oxide synthase, endothelial (EC 1.14.13.39) | protein | 404 | 40% helix, 16% strand | P29473 |
| B | Nitric oxide synthase, endothelial (EC 1.14.13.39) | protein | 403 | 40% helix, 16% strand | P29473 |
Ligands and binding sites
- 4V4 · N1-(3-(2-(6-Amino-4-methylpyridin-2-yl)ethyl)phenyl)-N1,N2-dimethylethane-1,2-diamine · ligand · 3 copies · chains A, B
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
- H4B · 5,6,7,8-tetrahydrobiopterin · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · chains A, B
- ACT · Acetate ion · additive · 4 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1024 | 0.84 | 0.85 | 90 | HEM, H4B, 4V4, ACT, GOL |
| 2 | 1149 | 0.83 | 0.84 | 89 | HEM, H4B, 4V4, ACT, GOL |
| 3 | 94 | 0.73 | 0.95 | 22 | empty |
| 4 | 105 | 0.56 | 0.84 | 19 | empty |
| 5 | 95 | 0.52 | 0.83 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 2835 Ų buried · 35 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (artifact).
Compared structures
- 4UH7 · Structure of bovine endothelial nitric oxide synthase heme domain in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29473
- Elsewhere: RCSB PDB 4UH7 · PDBe 4UH7 · UniProt P29473
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