MolNFT v1 · #107622 · protein + RNA
Structure of the helical measles virus nucleocapsid
4UFT · Nucleoprotein: “Structure of the helical measles virus nucleocapsid”. Electron microscopy, 5 pockets (best druggability 0.57). MolNFT v1 #107622 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4UFT
- Type
- protein + RNA
- Length
- 383 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoprotein; 5'-R(*CP*CP*CP*CP*CP*CP)-3'
- UniProt
- P10050
- Pockets
- 5 · best druggability 0.57
Structure
electron microscopy · 2 distinct chains · 43% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Nucleoprotein | protein | 377 | 43% helix, 4% strand | P10050 |
| R | 5'-R(*CP*CP*CP*CP*CP*CP)-3' | rna | 6 | — | — |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 110 | 0.57 | 0.85 | 22 | empty |
| 2 | 73 | 0.49 | 0.84 | 22 | empty |
| 3 | 52 | 0.39 | 0.81 | 17 | empty |
| 4 | 57 | 0.34 | 0.77 | 15 | empty |
| 5 | 78 | 0.31 | 0.74 | 14 | empty |
Interfaces
1 interface between chains.
- B–R · 877 Ų buried · 15 hydrogen bonds · protein-nucleic
Compared structures
- 4UFT · Structure of the helical Measles virus nucleocapsid · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P10050
- Elsewhere: RCSB PDB 4UFT · PDBe 4UFT · UniProt P10050
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