MolNFT v1 · #107551 · protein

Structure of mn-bound periplasmic metal binding protein from candidatus liberibacter asiaticus

4UDO · Periplasmic solute binding protein: “Structure of mn-bound periplasmic metal binding protein from candidatus liberibacter asiaticus”. X-ray diffraction, 2 ligands (MN, SO4), 2 pockets (best druggability 0.51). MolNFT v1 #107551 on…

PDB: 4UDO
Type: protein
Length: 266 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Periplasmic solute binding protein
UniProt: C6XF58
Ligands: MN, SO4
Pockets: 2 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Periplasmic solute binding protein	protein	266	45% helix, 15% strand	C6XF58

Ligands and binding sites

MN · Manganese (II) ion · metal · chains A
SO4 · Sulfate ion · ion · 5 copies · chains A
GOL · Glycerol · additive · 2 copies · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.51	0.87	14	empty
2	99	0.34	0.73	20	ACT

Compared structures

4UDO · structure of Mn-bound periplasmic metal binding protein from candidatus liberibacter… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C6XF58
Elsewhere: RCSB PDB 4UDO · PDBe 4UDO · UniProt C6XF58

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