MolNFT v1 · #107414 · DNA
Structure of the DNA duplex D(ATTAAT)2 with hoogsteen hydrogen bonds
4U9M · DNA (5'-D(*AP*TP*TP*AP*AP*T)-3'): “Structure of the DNA duplex D(ATTAAT)2 with hoogsteen hydrogen bonds”. X-ray diffraction. MolNFT v1 #107414 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4U9M
- Type
- DNA
- Length
- 30 nucleotides
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*AP*TP*TP*AP*AP*T)-3')
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | DNA (5'-D(*AP*TP*TP*AP*AP*T)-3') | dna | 6 | — | — |
Interfaces
7 interfaces between chains.
- A–B · 286 Ų buried · 19 hydrogen bonds · nucleic-nucleic
- C–D · 274 Ų buried · 25 hydrogen bonds · nucleic-nucleic
- D–E · 108 Ų buried · 0 hydrogen bonds · nucleic-nucleic
- A–C · 104 Ų buried · 0 hydrogen bonds · nucleic-nucleic
- B–C · 90 Ų buried · 3 hydrogen bonds · nucleic-nucleic
Compared structures
- 4U9M · Structure of the DNA duplex d(ATTAAT)2 with Hoogsteen hydrogen bonds · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4U9M · PDBe 4U9M
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