MolNFT v1 · #107405 · protein
Structure of the lbpb N-lobe from neisseria meningitidis
4U9C · Lactoferrin-binding protein B: “Structure of the lbpb N-lobe from neisseria meningitidis”. X-ray diffraction, 6 pockets (best druggability 0.61). MolNFT v1 #107405 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4U9C
- Type
- protein
- Length
- 586 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lactoferrin-binding protein B
- UniProt
- F0AS41
- Pockets
- 6 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 12% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lactoferrin-binding protein B | protein | 286 | 12% helix, 41% strand | F0AS41 |
| B | Lactoferrin-binding protein B | protein | 300 | 12% helix, 41% strand | F0AS41 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 251 | 0.61 | 0.81 | 31 | empty |
| 2 | 329 | 0.58 | 0.77 | 34 | empty |
| 3 | 103 | 0.38 | 0.75 | 17 | empty |
| 4 | 106 | 0.38 | 0.75 | 17 | empty |
| 5 | 95 | 0.34 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 513 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 4U9C · Structure of the lbpb N-lobe from neisseria meningitidis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F0AS41
- Elsewhere: RCSB PDB 4U9C · PDBe 4U9C · UniProt F0AS41
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