MolNFT v1 · #10740 · protein
High resolution crystal structure of the wild type tetraheme cytochrome C3 from desulfovibrio vulgaris miyazaki F
1J0O: “High resolution crystal structure of the wild type tetraheme cytochrome C3 from desulfovibrio vulgaris…”. X-ray diffraction, 1 ligand (HEM), 1 pocket (best druggability 0.76). MolNFT v1 #10740 on GenesisL1: 3D structure, binding…
- PDB
- 1J0O
- Type
- protein
- Length
- 107 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C3
- UniProt
- P00132
- Ligands
- HEM
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C3 | protein | 107 | 28% helix, 11% strand | P00132 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A
- EOH · Ethanol · additive · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 668 | 0.76 | 0.81 | 66 | HEM, EOH |
Modifications
Observed in the structure: 8 cofactor (heme attachment).
Compared structures
- 1J0O · High Resolution Crystal Structure of the wild type Tetraheme Cytochrome c3 from… · the same entry in another collection · chain A against A, TM-score 1.00
- P00132 · AlphaFold monomer V2.0 prediction for cytochrome C3 (P00132) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00132
- Elsewhere: RCSB PDB 1J0O · PDBe 1J0O · UniProt P00132
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