MolNFT v1 · #107358 · protein
Crystal structure of fructokinase from brucella abortus 2308
4U7X · RIBOKINASE:CARBOHYDRATE kinase, pfkb: “Crystal structure of fructokinase from brucella abortus 2308”. X-ray diffraction, 1 ligand (NA), 2 pockets (best druggability 0.67). MolNFT v1 #107358 on GenesisL1: 3D structure, binding sites…
- PDB
- 4U7X
- Type
- protein
- Length
- 313 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RIBOKINASE:CARBOHYDRATE kinase, pfkb
- EC
- 2.7.1.4
- UniProt
- Q2YNY7
- Ligands
- NA
- Pockets
- 2 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RIBOKINASE:CARBOHYDRATE kinase, pfkb (EC 2.7.1.4) | protein | 313 | 37% helix, 24% strand | Q2YNY7 |
Ligands and binding sites
- NA · Sodium ion · metal · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 456 | 0.67 | 0.79 | 56 | empty |
| 2 | 55 | 0.31 | 0.76 | 16 | empty |
Compared structures
- 4U7X · Crystal structure of Fructokinase from Brucella abortus 2308 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2YNY7
- Elsewhere: RCSB PDB 4U7X · PDBe 4U7X · UniProt Q2YNY7
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