MolNFT v1 · #107312 · DNA + RNA
Crystal structure of DNA/RNA duplex obtained in the presence of spermine
4U6M · RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3'): “Crystal structure of DNA/RNA duplex obtained in the presence of spermine”. X-ray diffraction. MolNFT v1 #107312 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4U6M
- Type
- DNA + RNA
- Length
- 18 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3'); DNA…
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | rna | 9 | — | — |
| B | DNA (5'-D(*(5CM)P*TP*CP*TP*TP*CP*TP*TP*(5CM))-3') | dna | 9 | — | — |
Interfaces
1 interface between chains.
- A–B · 422 Ų buried · 37 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 4U6M · Crystal structure of DNA/RNA duplex obtained in the presence of Spermine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4U6M · PDBe 4U6M
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