MolNFT v1 · #107246 · protein
Crystal structure of pectate lyase PEL3 from pectobacterium carotovorum with one monomer in the A.U.
4U4B: “Crystal structure of pectate lyase PEL3 from pectobacterium carotovorum with one monomer in the A.U.”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.45). MolNFT v1 #107246 on GenesisL1: 3D structure, binding…
- PDB
- 4U4B
- Type
- protein
- Length
- 326 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pectate lyase
- UniProt
- Q47465
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pectate lyase | protein | 326 | 3% helix, 48% strand | Q47465 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 186 | 0.45 | 0.75 | 32 | SO4, EDO |
| 2 | 190 | 0.43 | 0.73 | 24 | empty |
| 3 | 70 | 0.32 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 4U4B · Crystal Structure of Pectate Lyase Pel3 from Pectobacterium carotovorum with one monomer… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q47465
- Elsewhere: RCSB PDB 4U4B · PDBe 4U4B · UniProt Q47465
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