MolNFT v1 · #107212 · RNA
RNA duplex containing uu mispair
4U38 · RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'): “RNA duplex containing uu mispair”. X-ray diffraction. MolNFT v1 #107212 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4U38
- Type
- RNA
- Length
- 56 nucleotides
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'); RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3')
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3') | rna | 7 | — | — |
| B, D, F, H | RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3') | rna | 7 | — | — |
Interfaces
18 interfaces between chains.
- G–H · 340 Ų buried · 36 hydrogen bonds · nucleic-nucleic
- C–D · 338 Ų buried · 37 hydrogen bonds · nucleic-nucleic
- E–F · 336 Ų buried · 36 hydrogen bonds · nucleic-nucleic
- A–B · 335 Ų buried · 32 hydrogen bonds · nucleic-nucleic
- C–E · 113 Ų buried · 3 hydrogen bonds · nucleic-nucleic
Compared structures
- 4U38 · RNA duplex containing UU mispair · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4U38 · PDBe 4U38
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.