MolNFT v1 · #107064 · protein
Homodimeric single domain antibody (sdab) against staphylococcal enterotoxin B (seb)
4TYU: “Homodimeric single domain antibody (sdab) against staphylococcal enterotoxin B (seb)”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.28). MolNFT v1 #107064 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4TYU
- Type
- protein
- Length
- 260 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Single domain antibody
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Single domain antibody | protein | 130 | 14% helix, 47% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.28 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 850 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 4TYU · Homodimeric Single Domain Antibody (sdAb) against Staphylococcal enterotoxin B (SEB) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4TYU · PDBe 4TYU
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