MolNFT v1 · #106843 · protein
Deinococcus radiodurans DNA polymerase III subunit beta
4TRT: “Deinococcus radiodurans DNA polymerase III subunit beta”. X-ray diffraction, 2 pockets (best druggability 0.42). MolNFT v1 #106843 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4TRT
- Type
- protein
- Length
- 722 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA polymerase III subunit beta
- EC
- 2.7.7.7
- UniProt
- Q9RYE8
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA polymerase III subunit beta (EC 2.7.7.7) | protein | 361 | 24% helix, 43% strand | Q9RYE8 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 159 | 0.42 | 0.74 | 30 | empty |
| 2 | 67 | 0.35 | 0.77 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1129 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 4TRT · Deinococcus radiodurans DNA polymerase III subunit beta · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RYE8
- Elsewhere: RCSB PDB 4TRT · PDBe 4TRT · UniProt Q9RYE8
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