MolNFT v1 · #106831 · protein
The snl domain of sidc
4TRG: “The snl domain of sidc”. X-ray diffraction, 1 ligand (HG), 8 pockets (best druggability 0.79). MolNFT v1 #106831 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4TRG
- Type
- protein
- Length
- 1,018 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sidc
- UniProt
- Q6RCR4
- Ligands
- HG
- Pockets
- 8 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Sidc | protein | 509 | 47% helix, 10% strand | Q6RCR4 |
Ligands and binding sites
- HG · Mercury (II) ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 870 | 0.79 | 0.82 | 70 | empty |
| 2 | 86 | 0.76 | 0.98 | 25 | HG |
| 3 | 681 | 0.75 | 0.81 | 69 | empty |
| 4 | 100 | 0.75 | 0.96 | 25 | HG |
| 5 | 185 | 0.51 | 0.78 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 2534 Ų buried · 32 hydrogen bonds · protein-protein
Compared structures
- 4TRG · the SNL domain of SidC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6RCR4
- Elsewhere: RCSB PDB 4TRG · PDBe 4TRG · UniProt Q6RCR4
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