MolNFT v1 · #106826 · RNA

Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals

4TRA · Trnaphe: “Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.59). MolNFT v1 #106826 on GenesisL1: 3D…

PDB: 4TRA
Type: RNA
Length: 76 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Trnaphe
Ligands: MG
Pockets: 2 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Trnaphe	rna	76	—	—

Ligands and binding sites

MG · Magnesium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	546	0.59	0.74	32	empty
2	366	0.55	0.75	22	empty

Modifications

Observed in the structure: 14 modified (nucleotide modification).

Compared structures

4TRA · Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4TRA · PDBe 4TRA

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.