MolNFT v1 · #106821 · protein
C3LARVIN toxin, an ADP-ribosyltransferase from paenibacillus larvae
4TR5: “C3LARVIN toxin, an ADP-ribosyltransferase from paenibacillus larvae”. X-ray diffraction, 4 pockets (best druggability 0.60). MolNFT v1 #106821 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4TR5
- Type
- protein
- Length
- 200 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C3LARVIN
- UniProt
- W2E3J5
- Pockets
- 4 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | C3LARVIN | protein | 200 | 30% helix, 30% strand | W2E3J5 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 287 | 0.60 | 0.78 | 30 | empty |
| 2 | 74 | 0.39 | 0.78 | 20 | empty |
| 3 | 92 | 0.36 | 0.75 | 16 | empty |
| 4 | 97 | 0.35 | 0.74 | 14 | empty |
Compared structures
- 4TR5 · C3larvin toxin, an ADP-ribosyltransferase from Paenibacillus larvae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W2E3J5
- Elsewhere: RCSB PDB 4TR5 · PDBe 4TR5 · UniProt W2E3J5
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