MolNFT v1 · #106779 · protein

Crystal structure of hookworm platelet inhibitor

4TPV: “Crystal structure of hookworm platelet inhibitor”. X-ray diffraction, 3 pockets (best druggability 0.74). MolNFT v1 #106779 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4TPV
Type: protein
Length: 359 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Platelet inhibitor
UniProt: Q962V9
Pockets: 3 · best druggability 0.74

Structure

x-ray diffraction · 2 distinct chains · 35% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Platelet inhibitor	protein	182	34% helix, 19% strand	Q962V9
B	Platelet inhibitor	protein	177	35% helix, 20% strand	Q962V9

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	79	0.74	0.97	28	empty
2	108	0.39	0.75	17	empty
3	55	0.26	0.72	14	empty

Interfaces

1 interface between chains.

A–B · 1192 Å² buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 disulfide (disulfide).

Compared structures

4TPV · Crystal Structure of Hookworm Platelet Inhibitor · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q962V9
Elsewhere: RCSB PDB 4TPV · PDBe 4TPV · UniProt Q962V9

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.