MolNFT v1 · #106681 · protein

Crystal structure of eutl from clostridium perfringens at 298K

4TM6 · Ethanolamine utilization protein eutl: “Crystal structure of eutl from clostridium perfringens at 298K”. X-ray diffraction, 1 ligand (NA), 7 pockets (best druggability 0.50). MolNFT v1 #106681 on GenesisL1: 3D structure, binding…

PDB: 4TM6
Type: protein
Length: 661 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ethanolamine utilization protein eutl
UniProt: B1BQ33
Ligands: NA
Pockets: 7 · best druggability 0.50

Structure

x-ray diffraction · 3 distinct chains · 37% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ethanolamine utilization protein eutl	protein	217	37% helix, 27% strand	B1BQ33
B	Ethanolamine utilization protein eutl	protein	219	36% helix, 26% strand	B1BQ33
C	Ethanolamine utilization protein eutl	protein	225	38% helix, 26% strand	B1BQ33

Ligands and binding sites

NA · Sodium ion · metal · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	137	0.50	0.79	21	empty
2	132	0.48	0.78	20	empty
3	139	0.48	0.78	26	empty
4	129	0.47	0.78	23	empty
5	106	0.44	0.78	20	empty

Interfaces

3 interfaces between chains.

A–C · 1718 Å² buried · 20 hydrogen bonds · protein-protein
B–C · 1585 Å² buried · 19 hydrogen bonds · protein-protein
A–B · 1560 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

4TM6 · Crystal Structure of EutL from Clostridium Perfringens at 298K · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B1BQ33
Elsewhere: RCSB PDB 4TM6 · PDBe 4TM6 · UniProt B1BQ33

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