MolNFT v1 · #106584 · protein
Crystal structure of the bacillus megaterium qm B1551 spore cortex- lytic enzyme slel
4S3K · Spore germination protein yaah: “Crystal structure of the bacillus megaterium qm B1551 spore cortex- lytic enzyme slel”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.54). MolNFT v1 #106584 on GenesisL1: 3D…
- PDB
- 4S3K
- Type
- protein
- Length
- 429 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spore germination protein yaah
- EC
- 3.2.1.-
- UniProt
- D5DUS2
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spore germination protein yaah (EC 3.2.1.-) | protein | 429 | 36% helix, 24% strand | D5DUS2 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 216 | 0.54 | 0.77 | 33 | empty |
| 2 | 63 | 0.33 | 0.76 | 17 | empty |
| 3 | 57 | 0.31 | 0.76 | 11 | empty |
Compared structures
- 4S3K · Crystal structure of the Bacillus megaterium QM B1551 spore cortex-lytic enzyme SleL · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D5DUS2
- Elsewhere: RCSB PDB 4S3K · PDBe 4S3K · UniProt D5DUS2
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