MolNFT v1 · #106430 · protein

Crystal structure of yellow lupin llpr-10.1A protein in complex with trans-zeatin

4RYV · Protein llpr-10.1A: “Crystal structure of yellow lupin llpr-10.1A protein in complex with trans-zeatin”. X-ray diffraction, 2 ligands (ZEA, SO4), 1 pocket (best druggability 0.80). MolNFT v1 #106430 on GenesisL1: 3D structure…

PDB: 4RYV
Type: protein
Length: 155 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein llpr-10.1A
UniProt: P52778
Ligands: ZEA, SO4
Pockets: 1 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein llpr-10.1A	protein	155	30% helix, 45% strand	P52778

Ligands and binding sites

ZEA · (2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol · ligand · 5 copies · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	608	0.80	0.85	55	ZEA

Compared structures

4RYV · Crystal structure of yellow lupin LLPR-10.1A protein in complex with trans-zeatin · the same entry in another collection · chain A against A, TM-score 1.00
P52778 · AlphaFold monomer V2.0 prediction for protein LLR18A (P52778) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P52778
Elsewhere: RCSB PDB 4RYV · PDBe 4RYV · UniProt P52778

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